Updated several dependencies to their newer versions to leverage recent
fixes and improvements, enhance security, and ensure compatibility with
modern environments. This includes updates to core utilities, stream
management tools, glob matching libraries, and more. Significant changes
include updates to `lodash`, `minimatch`, `source-map`, and `three`.
Ensuring these updates also involved minor adjustments for compatibility
with updated API surfaces and behavior.
These changes may improve overall performance, offer better features,
and close potential security gaps in previous versions.
