Updated to new measurement data structure.
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235a3259cd
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5 changed files with 31 additions and 34 deletions
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@ -32,17 +32,17 @@ if __name__ == "__main__":
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plt.title("Time domain Simulation of BiPh3 COMPFID")
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plt.xlabel("Time (µs)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.tdx[-1], result.tdy[-1].imag, label="imaginary")
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plt.plot(result.tdx[-1], result.tdy[-1].real, label="real")
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plt.plot(result.tdx[-1], abs(result.tdy[-1]), label="abs")
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plt.plot(result.tdx, result.tdy[:, -1].imag, label="imaginary")
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plt.plot(result.tdx, result.tdy[:, -1].real, label="real")
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plt.plot(result.tdx, abs(result.tdy[:, -1]), label="abs")
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plt.subplot(1, 2, 2)
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plt.title("Frequency domain Simulation of BiPh3 COMPFID")
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plt.xlabel("Frequency (kHz)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.fdx[-1], result.fdy[-1].imag, label="imaginary")
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plt.plot(result.fdx[-1], result.fdy[-1].real, label="real")
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plt.plot(result.fdx[-1], abs(result.fdy[-1]), label="abs")
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plt.plot(result.fdx, result.fdy[:, -1].imag, label="imaginary")
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plt.plot(result.fdx, result.fdy[:, -1].real, label="real")
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plt.plot(result.fdx, abs(result.fdy[:, -1]), label="abs")
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plt.legend()
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plt.show()
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@ -29,17 +29,17 @@ if __name__ == "__main__":
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plt.title("Time domain Simulation of BiPh3 FID")
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plt.xlabel("Time (µs)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.tdx[0], result.tdy[0].imag, label="imaginary")
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plt.plot(result.tdx[0], result.tdy[0].real, label="real")
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plt.plot(result.tdx[0], abs(result.tdy[0]), label="abs")
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plt.plot(result.tdx, result.tdy[:, 0].imag, label="imaginary")
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plt.plot(result.tdx, result.tdy[:, 0].real, label="real")
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plt.plot(result.tdx, abs(result.tdy[:, 0]), label="abs")
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plt.subplot(1, 2, 2)
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plt.title("Frequency domain Simulation of BiPh3 FID")
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plt.xlabel("Frequency (kHz)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.fdx[0], result.fdy[0].imag, label="imaginary")
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plt.plot(result.fdx[0], result.fdy[0].real, label="real")
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plt.plot(result.fdx[0], abs(result.fdy[0]), label="abs")
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plt.plot(result.fdx, result.fdy[:, 0].imag, label="imaginary")
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plt.plot(result.fdx, result.fdy[:, 0].real, label="real")
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plt.plot(result.fdx, abs(result.fdy[:, 0]), label="abs")
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plt.legend()
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plt.show()
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@ -27,17 +27,17 @@ if __name__ == "__main__":
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plt.title("Time domain Simulation of BiPh3 SE")
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plt.xlabel("Time (µs)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.tdx[0], result.tdy[0].imag, label="imaginary")
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plt.plot(result.tdx[0], result.tdy[0].real, label="real")
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plt.plot(result.tdx[0], abs(result.tdy[0]), label="abs")
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plt.plot(result.tdx, result.tdy[:, 0].imag, label="imaginary")
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plt.plot(result.tdx, result.tdy[:, 0].real, label="real")
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plt.plot(result.tdx, abs(result.tdy[:, 0]), label="abs")
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plt.subplot(1, 2, 2)
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plt.title("Frequency domain Simulation of BiPh3 SE")
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plt.xlabel("Frequency (kHz)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.fdx[0], result.fdy[0].imag, label="imaginary")
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plt.plot(result.fdx[0], result.fdy[0].real, label="real")
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plt.plot(result.fdx[0], abs(result.fdy[0]), label="abs")
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plt.plot(result.fdx, result.fdy[:, 0].imag, label="imaginary")
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plt.plot(result.fdx, result.fdy[:, 0].real, label="real")
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plt.plot(result.fdx, abs(result.fdy[:, 0]), label="abs")
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plt.legend()
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plt.show()
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@ -27,17 +27,17 @@ if __name__ == "__main__":
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plt.title("Time domain Simulation of BiPh3 SEPC")
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plt.xlabel("Time (µs)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.tdx[-1], result.tdy[-1].imag, label="imaginary")
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plt.plot(result.tdx[-1], result.tdy[-1].real, label="real")
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plt.plot(result.tdx[-1], abs(result.tdy[-1]), label="abs")
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plt.plot(result.tdx, result.tdy[:, -1].imag, label="imaginary")
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plt.plot(result.tdx, result.tdy[:, -1].real, label="real")
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plt.plot(result.tdx, abs(result.tdy[:, -1]), label="abs")
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plt.subplot(1, 2, 2)
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plt.title("Frequency domain Simulation of BiPh3 SEPC")
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plt.xlabel("Frequency (kHz)")
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plt.ylabel("Signal (a.u.)")
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plt.plot(result.fdx[-1], result.fdy[-1].imag, label="imaginary")
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plt.plot(result.fdx[-1], result.fdy[-1].real, label="real")
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plt.plot(result.fdx[-1], abs(result.fdy[-1]), label="abs")
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plt.plot(result.fdx, result.fdy[:, -1].imag, label="imaginary")
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plt.plot(result.fdx, result.fdy[:, -1].real, label="real")
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plt.plot(result.fdx, abs(result.fdy[:, -1]), label="abs")
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plt.legend()
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plt.show()
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@ -39,8 +39,6 @@ class SimulatorController(SpectrometerController):
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# Empty measurement object
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measurement_data = None
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readout_scheme = None
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for cycle in range(number_phasecycles):
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sample = self.get_sample_from_settings()
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@ -72,6 +70,8 @@ class SimulatorController(SpectrometerController):
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evidx = np.where((tdx > rx_begin) & (tdx < rx_stop))[0]
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tdx = tdx[evidx]
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result = result[evidx]
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# Add empty second dimension to result so it has shape (n_points, 1)
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result = np.expand_dims(result, axis=1)
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# Measurement name date + module + target frequency + averages + sequence name
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name = f"{datetime.now().strftime('%Y-%m-%d %H:%M:%S')} - Simulator - {self.simulator.model.target_frequency / 1e6} MHz - {self.simulator.model.averages} averages - {sequence.name}"
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@ -85,7 +85,7 @@ class SimulatorController(SpectrometerController):
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sample.resonant_frequency,
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)
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else:
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measurement_data.add_dataset(tdx, result / simulation.averages)
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measurement_data.add_dataset(result / simulation.averages)
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if (rx_begin and rx_stop) and phase:
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logger.debug(f"Phase: {phase}")
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@ -94,14 +94,11 @@ class SimulatorController(SpectrometerController):
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if phase and number_phasecycles > 1:
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# Apply the readout scheme
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tdy = np.zeros(len(measurement_data.tdx[0]), dtype=np.complex128)
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for cycle in range(number_phasecycles):
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tdy += (measurement_data.tdy[cycle])
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tdy_sum = np.sum(measurement_data.tdy, axis=1, keepdims=True)
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measurement_data.add_dataset(measurement_data.tdx[0], tdy)
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logger.info(f"Length of tdy: {len(tdy)}")
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measurement_data.add_dataset(tdy_sum)
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logger.debug(f"Measurement data shape: {measurement_data.tdy.shape}")
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return measurement_data
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