Added basic apodization.

pyproject.toml

@@ -26,7 +26,10 @@ classifiers = [
 dependencies = [
     "matplotlib",
     "pyqt6",
+    "sympy",
     "NQRduck",
+    "nqrduck-pulseprogrammer",
+    "nqrduck-spectrometer",
 ]
 
 [project.entry-points."nqrduck"]

src/nqrduck_measurement/controller.py

@@ -1,7 +1,12 @@
 import logging
 import json
+import numpy as np
+from  decimal import Decimal
 from PyQt6.QtCore import pyqtSlot, pyqtSignal
-from PyQt6.QtWidgets import QWidget
+import nqrduck.helpers.signalprocessing as sp
+from nqrduck_pulseprogrammer.view import OptionsDialog
+from nqrduck_spectrometer.pulsesequence import PulseSequence
+from .signalprocessing_options import Apodization
 from nqrduck.module.module_controller import ModuleController
 from nqrduck_spectrometer.measurement import Measurement
 
@@ -144,3 +149,51 @@ class MeasurementController(ModuleController):
             self.module.nqrduck_signal.emit(
                 "notification", ["Error", "File is not a valid measurement file."]
             )
+
+    def show_apodization_dialog(self) -> None:
+        """Show apodization dialog."""
+        logger.debug("Showing apodization dialog.")
+        # First we  check if there is a measurement.
+        if not self.module.model.displayed_measurement:
+            logger.debug("No measurement to apodize.")
+            self.module.nqrduck_signal.emit(
+                "notification", ["Error", "No measurement to apodize."]
+            )
+            return
+        
+         # We need to create a event which corresponds to the measurement.
+        event_duration = self.module.model.displayed_measurement.tdx[-1] * 1e-6
+
+        event = PulseSequence.Event(name="Apodization", duration=str(event_duration))
+        parameter = Apodization()
+        parameter.start_x  = 0
+        parameter.end_x = event_duration
+        dialog = OptionsDialog(event, parameter, self.module.view)
+        result = dialog.exec()
+
+        if result:
+            for option, function in dialog.return_functions.items():
+                logger.debug("Setting option %s of parameter %s in event %s to %s", option, parameter, event, function())
+                option.set_value(function())
+
+        # Get the function from the Apodization function
+        function = parameter.get_option_by_name(Apodization.APODIZATION_FUNCTIONS).value
+        logger.debug("Apodization function: %s", function)
+
+        # Get the y data weights from the function
+        resolution = (self.module.model.displayed_measurement.tdx[1] - self.module.model.displayed_measurement.tdx[0]) * 1e-6
+        y_weight = function.get_pulse_amplitude(event.duration, Decimal(resolution))
+        #Append the last point to the end of the array
+        y_weight = np.append(y_weight, y_weight[-1])
+
+        tdy_measurement = self.module.model.displayed_measurement.tdy * y_weight
+
+        measurement = Measurement(
+            self.module.model.displayed_measurement.tdx,
+            tdy_measurement,
+            target_frequency=self.module.model.displayed_measurement.target_frequency,
+            IF_frequency=self.module.model.displayed_measurement.IF_frequency,
+        )
+
+        self.module.model.displayed_measurement = measurement
+        self.module.model.add_measurement(measurement)

src/nqrduck_measurement/model.py

@@ -20,6 +20,7 @@ class MeasurementModel(ModuleModel):
         super().__init__(module)
         self.view_mode = self.TIME_VIEW
         self.measurements = []
+        self._displayed_measurement = None
 
     @property
     def view_mode(self):

src/nqrduck_measurement/resources/measurement_widget.ui

@@ -116,28 +116,28 @@
         </widget>
        </item>
        <item>
-        <widget class="QPushButton" name="pushButton_2">
+        <widget class="QPushButton" name="apodizationButton">
          <property name="text">
           <string>Apodization</string>
          </property>
         </widget>
        </item>
        <item>
-        <widget class="QPushButton" name="pushButton">
+        <widget class="QPushButton" name="baselineButton">
          <property name="text">
           <string>Baseline Correction</string>
          </property>
         </widget>
        </item>
        <item>
-        <widget class="QPushButton" name="pushButton_3">
+        <widget class="QPushButton" name="peakButton">
          <property name="text">
           <string>Peak-Picking</string>
          </property>
         </widget>
        </item>
        <item>
-        <widget class="QPushButton" name="pushButton_4">
+        <widget class="QPushButton" name="fittingButton">
          <property name="text">
           <string>Fitting</string>
          </property>

src/nqrduck_measurement/signalprocessing_options.py

@@ -0,0 +1,34 @@
+import sympy
+from nqrduck_spectrometer.base_spectrometer_model import BaseSpectrometerModel
+from nqrduck_spectrometer.pulseparameters import FunctionOption, NumericOption, GaussianFunction, CustomFunction, Function
+
+# We implement the signal processing options as PulseParamterOptions because we can then easily use the automatic UI generation
+
+class FIDFunction(Function):
+    """The exponetial FID function."""
+
+    name = "FID"
+
+    def __init__(self) -> None:
+        expr = sympy.sympify("exp( -x / T2star )")
+        super().__init__(expr)
+        self.start_x = 0
+        self.end_x = 30
+
+        self.add_parameter(Function.Parameter("T2star (microseconds)", "T2star", 10))
+
+
+class Apodization(BaseSpectrometerModel.PulseParameter):
+    APODIZATION_FUNCTIONS = "Apodization functions"
+
+    def __init__(self):
+        super().__init__("Apodization")
+
+        self.add_option(
+            FunctionOption(
+                self.APODIZATION_FUNCTIONS,
+                [FIDFunction(), GaussianFunction(), CustomFunction()],
+            ),
+        )
+
+

src/nqrduck_measurement/view.py

@@ -60,6 +60,8 @@ class MeasurementView(ModuleView):
         self.module.controller.set_frequency_failure.connect(self.on_set_frequency_failure)
         self.module.controller.set_averages_failure.connect(self.on_set_averages_failure)
 
+        self._ui_form.apodizationButton.clicked.connect(self.module.controller.show_apodization_dialog)
+
         # Call validator for buttonStart
         
         # Add logos
@@ -226,4 +228,3 @@ class MeasurementView(ModuleView):
             self.spinner_movie.stop()
             super().hide()
 
-    

src/nqrduck_measurement/widget.py

@@ -68,18 +68,18 @@ class Ui_Form(object):
         self.spLabel.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
         self.spLabel.setObjectName("spLabel")
         self.settingsLayout.addWidget(self.spLabel)
-        self.pushButton_2 = QtWidgets.QPushButton(parent=Form)
+        self.apodizationButton = QtWidgets.QPushButton(parent=Form)
-        self.pushButton_2.setObjectName("pushButton_2")
+        self.apodizationButton.setObjectName("apodizationButton")
-        self.settingsLayout.addWidget(self.pushButton_2)
+        self.settingsLayout.addWidget(self.apodizationButton)
-        self.pushButton = QtWidgets.QPushButton(parent=Form)
+        self.baselineButton = QtWidgets.QPushButton(parent=Form)
-        self.pushButton.setObjectName("pushButton")
+        self.baselineButton.setObjectName("baselineButton")
-        self.settingsLayout.addWidget(self.pushButton)
+        self.settingsLayout.addWidget(self.baselineButton)
-        self.pushButton_3 = QtWidgets.QPushButton(parent=Form)
+        self.peakButton = QtWidgets.QPushButton(parent=Form)
-        self.pushButton_3.setObjectName("pushButton_3")
+        self.peakButton.setObjectName("peakButton")
-        self.settingsLayout.addWidget(self.pushButton_3)
+        self.settingsLayout.addWidget(self.peakButton)
-        self.pushButton_4 = QtWidgets.QPushButton(parent=Form)
+        self.fittingButton = QtWidgets.QPushButton(parent=Form)
-        self.pushButton_4.setObjectName("pushButton_4")
+        self.fittingButton.setObjectName("fittingButton")
-        self.settingsLayout.addWidget(self.pushButton_4)
+        self.settingsLayout.addWidget(self.fittingButton)
         self.spsettingsButton = QtWidgets.QPushButton(parent=Form)
         self.spsettingsButton.setObjectName("spsettingsButton")
         self.settingsLayout.addWidget(self.spsettingsButton)
@@ -137,10 +137,10 @@ class Ui_Form(object):
         self.frequencyunitLabel.setText(_translate("Form", "MHz"))
         self.buttonStart.setText(_translate("Form", "Start Measurement"))
         self.spLabel.setText(_translate("Form", "Signal Processing"))
-        self.pushButton_2.setText(_translate("Form", "Apodization"))
+        self.apodizationButton.setText(_translate("Form", "Apodization"))
-        self.pushButton.setText(_translate("Form", "Baseline Correction"))
+        self.baselineButton.setText(_translate("Form", "Baseline Correction"))
-        self.pushButton_3.setText(_translate("Form", "Peak-Picking"))
+        self.peakButton.setText(_translate("Form", "Peak-Picking"))
-        self.pushButton_4.setText(_translate("Form", "Fitting"))
+        self.fittingButton.setText(_translate("Form", "Fitting"))
         self.spsettingsButton.setText(_translate("Form", "Settings"))
         self.exportButton.setText(_translate("Form", "Export Measurement"))
         self.importButton.setText(_translate("Form", "Import Measurement"))