Updated requirements, added quackseq autodoc.

requirements.txt

@@ -1,4 +1,5 @@
 sphinx
+setuptools
 pydata-sphinx-theme
 myst-parser
 nqrduck
@@ -7,5 +8,8 @@ nqrduck-spectrometer-limenqr
 nqrduck-spectrometer-simulator
 nqrduck-autotm
 nqrduck-broadband
+quackseq
+quackseq-simulator
+quackseq-limenqr
 sphinx-design
 sphinxcontrib-bibtex

source/api_reference/index.rst

@@ -23,4 +23,12 @@ API Reference
    :caption: Other Components:
 
    limedriverbindings
-   nqr-blochsimulator
+   nqr-blochsimulator
+
+.. toctree::
+   :maxdepth: 2
+   :caption: QuackSeq:
+
+   quackseq
+   quackseq-simulator
+   quackseq-limenqr

source/api_reference/quackseq-limenqr.rst

@@ -0,0 +1,8 @@
+QuackSeq LimeNQR
+================
+
+.. autosummary::
+    :toctree: _autosummary
+    :recursive:
+
+    quackseq_limenqr

source/api_reference/quackseq-simulator.rst

@@ -0,0 +1,8 @@
+QuackSeq Simulator
+==================
+
+.. autosummary::
+    :toctree: _autosummary
+    :recursive:
+
+    quackseq_simulator

source/api_reference/quackseq.rst

@@ -0,0 +1,8 @@
+QuackSeq
+========
+
+.. autosummary::
+    :toctree: _autosummary
+    :recursive:
+
+    quackseq

source/index.md

@@ -1,9 +1,9 @@
-# Welcome to the NQRduckumentation!
+# Welcome to the NQRduckumentation
 
 <img src="_static/Logo_full.png" alt="NQRduck Logo" class="center">
 <br>
 
-This program is intended as an educational tool for magnetic resonance experiments (NMR, NQR, ...). Its focus lies on modular behaviour depending on what nqrduck modules are installed. 
+This program is intended as an educational tool for magnetic resonance experiments (NMR, NQR, ...). Its focus lies on modular behaviour depending on what nqrduck modules are installed.
 
 ::::{grid} 2
 :gutter: 2
@@ -22,9 +22,9 @@ There exists a range of different modules for the NQRduck software. The tutorial
 :::
 :::{grid-item-card}
 :link: software_structure/index.html
-{fab}`python;pst-color-primary`  **Software Structure** 
+{fab}`python;pst-color-primary`  **Software Structure**
 ^^^
-The NQRduck comes with a user friendly PyQt6 based user interface. Different Python modules can be installed via pip to customize the functionality of the program. 
+The NQRduck comes with a user friendly PyQt6 based user interface. Different Python modules can be installed via pip to customize the functionality of the program.
 :::
 :::{grid-item-card}
 :link: api_reference/index.html
@@ -47,4 +47,4 @@ tutorials/index
 software_structure/index
 api_reference/index
 bibliography
-```
+```

source/installation.md

@@ -2,13 +2,11 @@
 
 ## Requirements
 
-
 - Python 3.10+
 - pip
 - virtualenv
 - About 600MB of free storage space
 
-
 ## Steps (Linux)
 
 1. Install the specified requirements.
@@ -21,16 +19,15 @@
     ```
 
 3. You can now install the NQRduck core program:
-    
-    ```bash 
+
+    ```bash
     pip install nqrduck
     ```
 
-
 4. Run the program with `nqrduck`. This should open up a window with the NQRduck install wizard.
 
 5. The install wizard for different modules should open up. Install the modules you would like to use. Some  modules have dependencies on other modules, but the install wizard will automatically install them for you.
 
 6. You now need to restart the program.
 
-7. You can switch between different modules with the toolbar. You can customize the appearance of the program in `Settings -> Preferences`. Settings are saved and restored on the next start.
+7. You can switch between different modules with the toolbar. You can customize the appearance of the program in `Settings -> Preferences`. Settings are saved and restored on the next start.