fix: Numpy types were deprecated leading to erros.

Fix Arch CI build error by installing system expat

.forgejo/workflows/python-package-debian.yml

@@ -4,16 +4,18 @@ on: [push, pull_request]
 
 jobs:
   build:
-    runs-on: ubuntu-latest 
+    runs-on: docker
+    container:
+      image: node:22-bookworm
 
     steps:
     - name: Update package list
       run: |
-        sudo apt-get update
+        apt-get update
 
     - name: Install git
       run: |
-        sudo apt-get install -y git
+        apt-get install -y git
 
     - name: Checkout repository
       uses: actions/checkout@v2
@@ -31,7 +33,7 @@ jobs:
 
     - name: Install dependencies
       run: |
-        sudo apt-get install -y libhdf5-dev limesuite liblimesuite-dev automake gcc pkg-config build-essential python-is-python3
+        apt-get install -y libhdf5-dev limesuite liblimesuite-dev automake gcc pkg-config build-essential python-is-python3
 
     - name: Install the package
       run: |

.forgejo/workflows/python-package.yml

@@ -4,11 +4,10 @@ on: [push, pull_request]
 
 jobs:
   build:
-    runs-on: ubuntu-latest 
-
+    runs-on: docker
     container:
       image: archlinux:latest
-      options: --privileged
+      options: '--privileged'
 
     steps:
     - name: Install git
@@ -22,7 +21,7 @@ jobs:
 
     - name: Install dependencies
       run: |
-        yes | pacman -S python python-pip hdf5 limesuite python-build automake gcc pkgconf base-devel
+        yes | pacman -S python python-pip hdf5 limesuite python-build automake gcc pkgconf base-devel expat
 
     - name: Install the package
       run: |
@@ -40,4 +39,4 @@ jobs:
       uses: actions/upload-artifact@v2
       with:
         name: built-package
-        path: dist/
+        path: dist/

.forgejo/workflows/python-publish_musllinux.yml

@@ -1,4 +1,4 @@
-name: Build, Test, and Upload Python Package
+name: Build, Test, and Upload Python Package (musllinux)
 
 on:
   push:
@@ -16,18 +16,20 @@ jobs:
 
   deploy:
 
-    runs-on: ubuntu-latest
+    runs-on: docker
+    container:
+      image: node:22-bookworm
 
   #  needs: [test]
 
     steps:
     - name: Update package list
       run: |
-        sudo apt-get update
+        apt-get update
 
     - name: Install git
       run: |
-        sudo apt-get install -y git
+        apt-get install -y git
 
     - name: Checkout repository
       uses: actions/checkout@v2

.forgejo/workflows/python-publish_sdist_manylinux.yml

@@ -1,4 +1,4 @@
-name: Build, Test, and Upload Python Package
+name: Build, Test, and Upload Python Package (sdist and manylinux)
 
 on:
   push:
@@ -16,18 +16,20 @@ jobs:
 
   deploy:
 
-    runs-on: ubuntu-latest
+    runs-on: docker
+    container:
+      image: node:22-bookworm
 
   #  needs: [test]
 
     steps:
     - name: Update package list
       run: |
-        sudo apt-get update
+        apt-get update
 
     - name: Install git
       run: |
-        sudo apt-get install -y git
+        apt-get install -y git
 
     - name: Checkout repository
       uses: actions/checkout@v2

README.md

@@ -1,6 +1,6 @@
 # Python Bindings for LimeDriver
 
-This is a Python package for the [LimeDriver](https://github.com/nqrduck/LimeDriver/) library.
+This is a Python package for the [LimeDriver](https://git.private.coffee/nqrduck/LimeDriver/) library.
 
 ## Dependencies
 
@@ -27,6 +27,21 @@ python3 -m venv venv
 source venv/bin/activate
 ```
 
+You can install the Python bindings using pip:
+
+```bash
+pip install limedriver
+```
+
+---
+
+Alternatively you can clone the repository and install the Python bindings from source:
+
+```bash
+git clone <this-repo-url>
+cd LimeDriverBindings
+```
+
 Ensure that the LimeDriver submodule is initialized:
 
 ```bash
@@ -51,7 +66,7 @@ import limedriver
 Npulses = 1000
 
 # Create a new PyLimeConfig object
-config = limedriver.PyLimeConfig(Npulses)
+config = limedriver.binding.PyLimeConfig(Npulses)
 
 # Modify the config as needed
 config.srate = 1e6

pyproject.toml

@@ -11,6 +11,7 @@ classifiers = [
     "Intended Audience :: Developers",
     "Topic :: Software Development :: Build Tools",
     "Programming Language :: Python :: 3",
+     "Operating System :: POSIX :: Linux",
 ]
 dependencies = [
     "h5py",
@@ -38,16 +39,13 @@ extend-select = [
   "D",   # pydocstyle
 ]
 
-[tool.ruff.lint.per-file-ignores]
-"__init__.py" = ["F401"]
-
 [tool.ruff.lint.pydocstyle]
 convention = "google"
 
 [project.urls]
 "Homepage" = "https://nqrduck.cool"
-"Bug Tracker" = "https://github.com/nqrduck/limedriverbindings/issues"
-"Source Code" = "https://github.com/nqrduck/limedriverbindings"
+"Bug Tracker" = "https://git.private.coffee/nqrduck/limedriverbindings/issues"
+"Source Code" = "https://git.private.coffee/nqrduck/limedriverbindings"
 
 [tool.hatch.build.targets.wheel]
 packages = ["src/limedriver"]

src/limedriver/__init__.py

@@ -1,2 +1,2 @@
 import limedriver.binding as binding
-import limedriver.hdf_reader as hdf_reader
+import limedriver.hdf_reader as hdf_reader

src/limedriver/hdf_reader.py

@@ -40,7 +40,7 @@ class HDF():
                     # initialize data array
                     dsize = f[HDFkey].shape
                     inddim = dsize[0]
-                    self.tdy = np.zeros((int(dsize[1]/2), int(dsize[0] * len(HDFkeys))),dtype=np.complex_)
+                    self.tdy = np.zeros((int(dsize[1]/2), int(dsize[0] * len(HDFkeys))),dtype=np.complex128)
                     
                     # initialize the output objects
                     self.attrs = [dynclass() for jj in range(len(HDFkeys))]
@@ -66,9 +66,15 @@ class HDF():
                 # Get the data
                 data_raw = np.array(f[HDFkey])
                 try:
-                    self.tdy[:,ii*inddim:(ii+1)*inddim] = np.transpose(np.float_(data_raw[:,::2])) + 1j*np.transpose(np.float_(data_raw[:,1::2]))
-                except:
-                    pass
+                    self.tdy[:,ii*inddim:(ii+1)*inddim] = np.transpose(np.float64(data_raw[:,::2])) + 1j*np.transpose(np.float64(data_raw[:,1::2]))
+                except Exception as e:
+                    print('Problem reading the data of the HDF file! Error: ' + str(e))
+                    self.tdy = []
+                    self.tdx = []
+                    self.attrs = []
+                    self.parsoutp = {}
+                    self.parvar = {}
+                    return
                     
                     
                 # Get the arguments